Install Yambo on Ubuntu/LinuxMint with Intel compiler: Difference between revisions

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* [https://software.intel.com/content/www/us/en/develop/articles/oneapi-standalone-components.html#inpage-nav-10-undefined Intel MPI libraries]  
* [https://software.intel.com/content/www/us/en/develop/articles/oneapi-standalone-components.html#inpage-nav-10-undefined Intel MPI libraries]  
* [https://software.intel.com/content/www/us/en/develop/articles/oneapi-standalone-components.html#inpage-nav-11-5 Intel MKL libraries].
* [https://software.intel.com/content/www/us/en/develop/articles/oneapi-standalone-components.html#inpage-nav-11-5 Intel MKL libraries].
notice that Intel compilers require g++ on your system to work properly if you did not installed it yet, just do it with the command:
sudo apt-get install g++
and then you need also the zlib in order to compile NetCDF and HDF5, that you can install with the command:
sudo apt install zlib1g zlib1g-dev


Now that you have installed all packages necessary to compile yambo, you can setup the Intel environment.
Now that you have installed all packages necessary to compile yambo, you can setup the Intel environment.
If you use th bash/sh shell just do:
If you use the bash/sh shell just do:


  source /opt/intel/oneapi/setvars.sh
  source /opt/intel/oneapi/setvars.sh
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to use MKL also for BLACS and SCALAPACK.  
to use MKL also for BLACS and SCALAPACK.  


  ./configure FC=mpiifort F77=mpiifort  --enable-open-mp --enable-par-linalg --with-scalapack-libs=mkl --with-blacs-libs=mkl --enable-slepc-linalg
  ./configure CC=icx MPICC=mpiicx MPIFC=mpiifort MPIF77=mpiifort FC=ifort F77=ifort --enable-open-mp --enable-par-linalg --with-scalapack-libs=mkl --with-blacs-libs=mkl --enable-slepc-linalg


finally compile the code with:
finally compile the code with:
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<span style="color:red">Nota bene</span>: every time you compile or use yambo, you have to load the Intel variables with the command: '''source /opt/intel/oneapi/setvars.sh'''
<span style="color:red">Nota bene</span>: every time you compile or use yambo, you have to load the Intel variables with the command: '''source /opt/intel/oneapi/setvars.sh'''
If you have problems compiling PetSC and Slepc inside Yambo you can download them separately, configure and compile them and the link the libraries with Yambo.<br><br>
'''for PetSC:'''
  Download last version, for example:
  wget https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-3.21.2.tar.gz
  tar zxvf petsc-3.21.2.tar.gz
  cd petsc-3.21.2
  export PETSC_DIR=$PWD
  export PETSC_ARCH=linux-opt
  <span style="color:blue">export INSTALL_DIR=/home/attacc/local_single</span>  # where you want to install the libraries
  ./configure --prefix=${INSTALL_DIR} CC=mpiicx CXX=mpiicx FC=mpiifx --with-blas-lapack-dir=${MKLROOT} --with-scalapack-dir=${MKLROOT} --with-precision=single
  make 
  make install
Notice that if you use Yambo_nl you have to compile the libraries in double-precision
'''for the SlePC:'''
  wget https://slepc.upv.es/download/distrib/slepc-3.21.1.tar.gz
  cd slepc-3.21.1/
  export SLEPC_DIR=$PWD
  ./configure --prefix=${INSTALL_DIR}
  make
  make install
'''and then use them in Yambo:'''
./configure CC=icx MPICC=mpiicx MPIFC=mpiifort MPIF77=mpiifort FC=ifort F77=ifort --enable-open-mp --enable-par-linalg --with-scalapack-libs=mkl --with-blacs-libs=mkl \
  --enable-slepc-linalg --with-petsc-path="${INSTALL_DIR}" --with-slepc-path="${INSTALL_DIR}"

Latest revision as of 12:13, 11 June 2024

The Intel compiler are freely available on Linux machines.
From the Intel oneAPI page, download and install:

Now that you have installed all packages necessary to compile yambo, you can setup the Intel environment. If you use the bash/sh shell just do: 

source /opt/intel/oneapi/setvars.sh

now all intel compilers and libraries will be in your path, you are ready to install Yambo. The Yambo configure automatically recognize BLAS, LAPACK and FFT from MKL, you have just to specify to use MKL also for BLACS and SCALAPACK. 

./configure CC=icx MPICC=mpiicx MPIFC=mpiifort MPIF77=mpiifort FC=ifort F77=ifort --enable-open-mp --enable-par-linalg --with-scalapack-libs=mkl --with-blacs-libs=mkl --enable-slepc-linalg

finally compile the code with: 

make core

Nota bene: every time you compile or use yambo, you have to load the Intel variables with the command: source /opt/intel/oneapi/setvars.sh

If you have problems compiling PetSC and Slepc inside Yambo you can download them separately, configure and compile them and the link the libraries with Yambo.

for PetSC: 

 Download last version, for example:

 wget https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-3.21.2.tar.gz
 tar zxvf petsc-3.21.2.tar.gz
 cd petsc-3.21.2
 export PETSC_DIR=$PWD
 export PETSC_ARCH=linux-opt
 export INSTALL_DIR=/home/attacc/local_single   # where you want to install the libraries
 ./configure --prefix=${INSTALL_DIR} CC=mpiicx CXX=mpiicx FC=mpiifx --with-blas-lapack-dir=${MKLROOT} --with-scalapack-dir=${MKLROOT} --with-precision=single 
 make  
 make install

Notice that if you use Yambo_nl you have to compile the libraries in double-precision

for the SlePC: 

 wget https://slepc.upv.es/download/distrib/slepc-3.21.1.tar.gz
 cd slepc-3.21.1/
 export SLEPC_DIR=$PWD
 ./configure --prefix=${INSTALL_DIR} 
 make 
 make install

and then use them in Yambo: 

./configure CC=icx MPICC=mpiicx MPIFC=mpiifort MPIF77=mpiifort FC=ifort F77=ifort --enable-open-mp --enable-par-linalg --with-scalapack-libs=mkl --with-blacs-libs=mkl \
 --enable-slepc-linalg --with-petsc-path="${INSTALL_DIR}" --with-slepc-path="${INSTALL_DIR}"
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